Grub replaced by windows and removed from bootmenu entries

Your disk /dev/nvme0n1 is GPT and /dev/nvme0n1p1 is your EFI system partition (ESP), so in that way I sugget you should reinstall the grub and then update-grub, with the tools in the live USB (ESP option) or, even better in my opinion to follow what you’re doing, with the EFI “option” of:

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