Hello, I'm trying to run a garuda update and I'm running into a package conflict:
garuda-update
:: Synchronizing package databases...
garuda is up to date
core is up to date
extra is up to date
community is up to date
multilib is up to date
chaotic-aur is up to date
sneed-arch-repo 739.0 B 1668 B/s 00:00 [--------------------------------] 100%
--> Refreshing mirrorlists using reflector, please be patient..
################################################################################
################# Arch Linux mirrorlist generated by Reflector #################
################################################################################
# With: reflector --latest 5 --age 2 --fastest 5 --protocol https --sort rate --save /etc/pacman.d/mirrorlist
# When: 2022-08-12 17:29:21 UTC
# From: https://archlinux.org/mirrors/status/json/
# Retrieved: 2022-08-12 17:29:05 UTC
# Last Check: 2022-08-12 17:22:49 UTC
:: Synchronizing package databases...
garuda 86.6 KiB 182 KiB/s 00:00 [--------------------------------] 100%
core 159.1 KiB 374 KiB/s 00:00 [--------------------------------] 100%
extra 1709.7 KiB 1877 KiB/s 00:01 [--------------------------------] 100%
community 6.7 MiB 4.55 MiB/s 00:01 [--------------------------------] 100%
multilib 176.1 KiB 424 KiB/s 00:00 [--------------------------------] 100%
chaotic-aur 2012.5 KiB 2.66 MiB/s 00:01 [--------------------------------] 100%
sneed-arch-repo 739.0 B 886 B/s 00:01 [--------------------------------] 100%
spawn pacman -Su
:: Starting full system upgrade...
:: Replace med with community/med-openmpi? [Y/n] y
resolving dependencies...
looking for conflicting packages...
:: hdf5-openmpi and hdf5 are in conflict. Remove hdf5? [y/N]
Selecting no cancels the install. Selecting yes brings up a bunch of python conflicts:
:: hdf5-openmpi and hdf5 are in conflict. Remove hdf5? [y/N] y
y
:: hdf5-openmpi and python-h5py are in conflict. Remove python-h5py? [y/N] y
y
error: failed to prepare transaction (could not satisfy dependencies)
:: removing python-h5py breaks dependency 'python-h5py' required by python-keras
:: removing python-h5py breaks dependency 'python-h5py' required by python-tensorflow-cuda
Arch Wiki on Pacman has zero information on resolving package conflicts. And there is no way I am uninstalling my Python packages.
Any ideas?
garuda-inxi
System:
Kernel: 5.18.16-zen1-1-zen arch: x86_64 bits: 64 compiler: gcc v: 12.1.1
parameters: BOOT_IMAGE=/@/boot/vmlinuz-linux-zen
root=UUID=64fbe2ab-4d15-48e2-82ed-f8f1e3308956 rw rootflags=subvol=@
quiet splash rd.udev.log_priority=3 vt.global_cursor_default=0
systemd.unified_cgroup_hierarchy=1 loglevel=3 ibt=off
Desktop: KDE Plasma v: 5.25.4 tk: Qt v: 5.15.5 info: latte-dock
wm: kwin_x11 vt: 1 dm: SDDM Distro: Garuda Linux base: Arch Linux
Machine:
Type: Desktop System: Dell product: Precision Tower 7910 v: N/A
serial: <superuser required> Chassis: type: 7 serial: <superuser required>
Mobo: Dell model: 0NK5PH v: A00 serial: <superuser required> UEFI: Dell
v: A15 date: 09/11/2016
Battery:
Device-1: hidpp_battery_0 model: Logitech M720 Triathlon Multi-Device Mouse
serial: <filter> charge: 55% (should be ignored) rechargeable: yes
status: discharging
CPU:
Info: model: Intel Xeon E5-2630 v4 bits: 64 type: MT MCP SMP
arch: Broadwell built: 2015-18 process: Intel 14nm family: 6
model-id: 0x4F (79) stepping: 1 microcode: 0xB000040
Topology: cpus: 2x cores: 10 tpc: 2 threads: 20 smt: enabled cache: L1: 2x
640 KiB (1.2 MiB) desc: d-10x32 KiB; i-10x32 KiB L2: 2x 2.5 MiB (5 MiB)
desc: 10x256 KiB L3: 2x 25 MiB (50 MiB) desc: 1x25 MiB
Speed (MHz): avg: 2366 high: 3099 min/max: 1200/3100 scaling:
driver: intel_cpufreq governor: performance cores: 1: 2511 2: 1672 3: 2678
4: 2352 5: 2334 6: 2434 7: 1829 8: 1876 9: 2372 10: 2541 11: 2672
12: 2620 13: 2864 14: 2943 15: 2557 16: 2657 17: 2797 18: 1409 19: 2233
20: 3099 21: 2399 22: 2262 23: 2599 24: 2013 25: 2412 26: 2569 27: 2355
28: 2528 29: 1716 30: 2072 31: 2862 32: 1980 33: 2845 34: 1884 35: 2928
36: 1461 37: 2853 38: 2518 39: 2654 40: 1304 bogomips: 175730
Flags: avx avx2 ht lm nx pae sse sse2 sse3 sse4_1 sse4_2 ssse3 vmx
Vulnerabilities:
Type: itlb_multihit status: KVM: VMX disabled
Type: l1tf mitigation: PTE Inversion; VMX: conditional cache flushes, SMT
vulnerable
Type: mds mitigation: Clear CPU buffers; SMT vulnerable
Type: meltdown mitigation: PTI
Type: mmio_stale_data mitigation: Clear CPU buffers; SMT vulnerable
Type: retbleed status: Not affected
Type: spec_store_bypass mitigation: Speculative Store Bypass disabled via
prctl
Type: spectre_v1 mitigation: usercopy/swapgs barriers and __user pointer
sanitization
Type: spectre_v2 mitigation: Retpolines, IBPB: conditional, IBRS_FW,
STIBP: conditional, RSB filling
Type: srbds status: Not affected
Type: tsx_async_abort mitigation: Clear CPU buffers; SMT vulnerable
Graphics:
Device-1: NVIDIA GM204GL [Quadro M4000] driver: nvidia v: 515.65.01
alternate: nouveau,nvidia_drm non-free: 515.xx+ status: current (as of
2022-07) arch: Maxwell code: GMxxx process: TSMC 28nm built: 2014-19
pcie: gen: 3 speed: 8 GT/s lanes: 16 bus-ID: 03:00.0 chip-ID: 10de:13f1
class-ID: 0300
Display: x11 server: X.Org v: 21.1.4 with: Xwayland v: 22.1.3
compositor: kwin_x11 driver: X: loaded: nvidia gpu: nvidia display-ID: :0
screens: 1
Screen-1: 0 s-res: 3840x1080 s-dpi: 94 s-size: 1038x292mm (40.87x11.50")
s-diag: 1078mm (42.45")
Monitor-1: DP-5 pos: primary,left res: 1920x1080 hz: 60 dpi: 94
size: 521x293mm (20.51x11.54") diag: 598mm (23.53") modes: N/A
Monitor-2: DP-6 pos: right res: 1920x1080 hz: 60 dpi: 82
size: 598x336mm (23.54x13.23") diag: 686mm (27.01") modes: N/A
OpenGL: renderer: Quadro M4000/PCIe/SSE2 v: 4.6.0 NVIDIA 515.65.01
direct render: Yes
Audio:
Device-1: Intel C610/X99 series HD Audio vendor: Dell driver: snd_hda_intel
v: kernel bus-ID: 00:1b.0 chip-ID: 8086:8d20 class-ID: 0403
Device-2: NVIDIA GM204 High Definition Audio driver: snd_hda_intel
v: kernel pcie: gen: 3 speed: 8 GT/s lanes: 16 bus-ID: 03:00.1
chip-ID: 10de:0fbb class-ID: 0403
Sound Server-1: ALSA v: k5.18.16-zen1-1-zen running: yes
Sound Server-2: PulseAudio v: 16.1 running: no
Sound Server-3: PipeWire v: 0.3.56 running: yes
Network:
Device-1: Intel Ethernet I217-LM vendor: Dell driver: e1000e v: kernel
port: 9020 bus-ID: 00:19.0 chip-ID: 8086:153a class-ID: 0200
IF: enp0s25 state: up speed: 100 Mbps duplex: full mac: <filter>
Device-2: Intel I210 Gigabit Network vendor: Dell driver: igb v: kernel
pcie: gen: 1 speed: 2.5 GT/s lanes: 1 port: 6000 bus-ID: 09:00.0
chip-ID: 8086:1533 class-ID: 0200
IF: enp9s0 state: down mac: <filter>
Drives:
Local Storage: total: 4.09 TiB used: 215.44 GiB (5.1%)
SMART Message: Unable to run smartctl. Root privileges required.
ID-1: /dev/nvme0n1 maj-min: 259:0 vendor: Samsung model: SSD 970 EVO Plus
500GB size: 465.76 GiB block-size: physical: 512 B logical: 512 B
speed: 31.6 Gb/s lanes: 4 type: SSD serial: <filter> rev: 2B2QEXM7
temp: 45.9 C scheme: GPT
ID-2: /dev/sda maj-min: 8:0 type: USB vendor: Seagate
model: ST1000LM049-2GH172 size: 931.51 GiB block-size: physical: 4096 B
logical: 512 B type: HDD rpm: 7200 serial: <filter> scheme: GPT
ID-3: /dev/sdb maj-min: 8:16 type: USB vendor: Western Digital
model: WD10EZEX-75ZF5A0 size: 931.51 GiB block-size: physical: 4096 B
logical: 512 B type: N/A serial: <filter> scheme: GPT
ID-4: /dev/sdc maj-min: 8:32 type: USB vendor: Western Digital model: WD
My Passport 259D size: 1.82 TiB block-size: physical: 512 B
logical: 512 B type: N/A serial: <filter> rev: 1005 scheme: GPT
Partition:
ID-1: / raw-size: 236.51 GiB size: 236.51 GiB (100.00%) used: 215.39 GiB
(91.1%) fs: btrfs dev: /dev/nvme0n1p4 maj-min: 259:4
ID-2: /boot/efi raw-size: 512 MiB size: 598.8 MiB (116.96%) used: 58.8
MiB (9.8%) fs: vfat dev: /dev/nvme0n1p1 maj-min: 259:1
ID-3: /home raw-size: 236.51 GiB size: 236.51 GiB (100.00%) used: 215.39
GiB (91.1%) fs: btrfs dev: /dev/nvme0n1p4 maj-min: 259:4
ID-4: /var/log raw-size: 236.51 GiB size: 236.51 GiB (100.00%) used: 215.39
GiB (91.1%) fs: btrfs dev: /dev/nvme0n1p4 maj-min: 259:4
ID-5: /var/tmp raw-size: 236.51 GiB size: 236.51 GiB (100.00%) used: 215.39
GiB (91.1%) fs: btrfs dev: /dev/nvme0n1p4 maj-min: 259:4
Swap:
Kernel: swappiness: 133 (default 60) cache-pressure: 100 (default)
ID-1: swap-1 type: zram size: 62.81 GiB used: 1.5 MiB (0.0%)
priority: 100 dev: /dev/zram0
Sensors:
System Temperatures: cpu: 61.0 C mobo: N/A sodimm: SODIMM C gpu: nvidia
temp: 82 C
Fan Speeds (RPM): cpu: 989 gpu: nvidia fan: 73%
Info:
Processes: 598 Uptime: 17h 38m wakeups: 55 Memory: 62.81 GiB used: 10.92
GiB (17.4%) Init: systemd v: 251 default: graphical tool: systemctl
Compilers: gcc: 12.1.1 alt: 11 clang: 14.0.6 Packages: pacman: 2256
lib: 522 Shell: fish v: 3.5.1 running-in: alacritty inxi: 3.3.20
Garuda (2.6.5-1):
System install date: 2021-11-23
Last full system update: 2022-08-04
Is partially upgraded: Yes
Relevant software: NetworkManager
Windows dual boot: No/Undetected
Snapshots: Snapper
Failed units: bluetooth-autoconnect.service systemd-networkd-wait-online.service
