File conflict on update

Issues & Assistance
1

Hello everyone,

Got a quite new issue with the latest updates.
I'm try to update from Discover.
Took a bit of time but I brought the error message to a somewhat more readable form:

gpgme <-> qgpgme (/usr/include/QGpgME/AbstractImportJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/AddExistingSubkeyJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/AddUserIDJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/ChangeExpiryJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/ChangeOwnerTrustJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/ChangePasswdJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/CryptoConfig), 
gpgme <-> qgpgme (/usr/include/QGpgME/DN), 
gpgme <-> qgpgme (/usr/include/QGpgME/DataProvider), 
gpgme <-> qgpgme (/usr/include/QGpgME/Debug), 
gpgme <-> qgpgme (/usr/include/QGpgME/DecryptJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/DecryptVerifyArchiveJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/DecryptVerifyJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/DefaultKeyGenerationJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/DeleteJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/DownloadJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/EncryptArchiveJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/EncryptJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/ExportJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/FileListDataProvider), 
gpgme <-> qgpgme (/usr/include/QGpgME/GpgCardJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/HierarchicalKeyKistJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/ImportFromKeyserverJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/ImportJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/Job), 
gpgme <-> qgpgme (/usr/include/QGpgME/KeyForMailboxJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/KeyGenerationJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/KeyListJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/ListAllKeysJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/MultiDeleteJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/Protocol), 
gpgme <-> qgpgme (/usr/include/QGpgME/QGpgMENewCryptoConfig), 
gpgme <-> qgpgme (/usr/include/QGpgME/QuickJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/ReceiveKeysJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/RefreshKeysJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/RevokeKeyJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/SetPrimaryUserIDJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/SignArchiveJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/SignEncryptArchiveJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/SignEncryptJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/SignJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/SignKeyJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/SpecialJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/TofuPolicyJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/VerifyDetachedJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/VerifyOpaqueJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/WKDLookupJob), 
gpgme <-> qgpgme (/usr/include/QGpgME/WKDLookupResult), 
gpgme <-> qgpgme (/usr/include/QGpgME/WKSPublishJob), 
gpgme <-> qgpgme (/usr/include/qgpgme/abstractimportjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/addexistingsubkeyjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/adduseridjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/changeexpiryjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/changeownertrustjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/changepasswdjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/cryptoconfig.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/dataprovider.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/debug.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/decryptjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/decryptverifyarchivejob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/decryptverifyjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/defaultkeygenerationjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/deletejob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/dn.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/downloadjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/encryptarchivejob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/encryptjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/exportjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/filelistdataprovider.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/gpgcardjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/hierarchicalkeylistjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/importfromkeyserverjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/importjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/job.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/keyformailboxjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/keygenerationjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/keylistjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/listallkeysjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/multideletejob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/protocol.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/qgpgme_export.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/qgpgme_version.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/qgpgmenewcryptoconfig.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/quickjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/receivekeysjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/refreshkeysjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/revokekeyjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/setprimaryuseridjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/signarchivejob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/signencryptarchivejob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/signencryptjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/signjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/signkeyjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/specialjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/tofupolicyjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/verifydetachedjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/verifyopaquejob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/wkdlookupjob.h), 
gpgme <-> qgpgme (/usr/include/qgpgme/wkdlookupresult.h),
gpgme <-> qgpgme (/usr/include/qgpgme/wkspublishjob.h): conflicting files

Do you guys have any sort of idea how can I solve this?
Should just simply wait for a bit until new updates came or shall I try update from konsole?

My inxi:

System:
  Kernel: 6.3.1-zen1-1-zen arch: x86_64 bits: 64 compiler: gcc v: 13.1.1
    parameters: BOOT_IMAGE=/@/boot/vmlinuz-linux-zen
    root=UUID=3ee184a0-0e23-45f1-86cd-004e8ffaf1f9 rw rootflags=subvol=@
    quiet quiet splash rd.udev.log_priority=3 vt.global_cursor_default=0
    resume=UUID=707c3a74-3952-49c8-8020-05064bbf8d26 loglevel=3 ibt=off
  Desktop: KDE Plasma v: 5.27.4 tk: Qt v: 5.15.9 wm: kwin_x11 vt: 1 dm: SDDM
    Distro: Garuda Linux base: Arch Linux
Machine:
  Type: Laptop System: Micro-Star product: Katana GF66 11UE v: REV:1.0
    serial: <superuser required> Chassis: type: 10 serial: <superuser required>
  Mobo: Micro-Star model: MS-1581 v: REV:1.0 serial: <superuser required>
    UEFI: American Megatrends LLC. v: E1581IMS.312 date: 06/28/2022
Battery:
  ID-1: BAT1 charge: 41.5 Wh (95.2%) condition: 43.6/52.0 Wh (83.9%)
    volts: 12.4 min: 11.4 model: MSI BIF0_9 type: Li-ion serial: N/A
    status: not charging
CPU:
  Info: model: 11th Gen Intel Core i5-11400H bits: 64 type: MT MCP
    arch: Tiger Lake gen: core 11 level: v4 note: check built: 2020
    process: Intel 10nm family: 6 model-id: 0x8D (141) stepping: 1
    microcode: 0x42
  Topology: cpus: 1x cores: 6 tpc: 2 threads: 12 smt: enabled cache:
    L1: 480 KiB desc: d-6x48 KiB; i-6x32 KiB L2: 7.5 MiB desc: 6x1.2 MiB
    L3: 12 MiB desc: 1x12 MiB
  Speed (MHz): avg: 3087 high: 4500 min/max: 800/4500 scaling:
    driver: intel_cpufreq governor: performance cores: 1: 801 2: 4500 3: 4500
    4: 4052 5: 4500 6: 800 7: 801 8: 801 9: 4500 10: 4500 11: 2790 12: 4500
    bogomips: 64512
  Flags: avx avx2 ht lm nx pae sse sse2 sse3 sse4_1 sse4_2 ssse3 vmx
  Vulnerabilities: <filter>
Graphics:
  Device-1: Intel TigerLake-H GT1 [UHD Graphics] vendor: Micro-Star MSI
    driver: i915 v: kernel arch: Gen-12.1 process: Intel 10nm built: 2020-21
    ports: active: eDP-1 empty: DP-1 bus-ID: 00:02.0 chip-ID: 8086:9a68
    class-ID: 0300
  Device-2: NVIDIA GA106M [GeForce RTX 3060 Mobile / Max-Q]
    vendor: Micro-Star MSI driver: nvidia v: 530.41.03
    alternate: nouveau,nvidia_drm non-free: 530.xx+
    status: current (as of 2023-03) arch: Ampere code: GAxxx
    process: TSMC n7 (7nm) built: 2020-22 pcie: gen: 1 speed: 2.5 GT/s
    lanes: 16 link-max: gen: 4 speed: 16 GT/s bus-ID: 01:00.0
    chip-ID: 10de:2520 class-ID: 0300
  Device-3: Bison HD Webcam type: USB driver: uvcvideo bus-ID: 3-10:4
    chip-ID: 5986:211b class-ID: 0e02
  Display: x11 server: X.Org v: 21.1.8 with: Xwayland v: 23.1.1
    compositor: kwin_x11 driver: X: loaded: modesetting,nvidia unloaded: nouveau
    alternate: fbdev,intel,nv,vesa dri: iris gpu: i915 display-ID: :0
    screens: 1
  Screen-1: 0 s-res: 3840x1080 s-dpi: 96 s-size: 1013x285mm (39.88x11.22")
    s-diag: 1052mm (41.43")
  Monitor-1: HDMI-1-0 pos: primary,right res: 1920x1080 dpi: 93
    size: 527x296mm (20.75x11.65") diag: 604mm (23.8") modes: N/A
  Monitor-2: eDP-1 pos: left res: 1920x1080 hz: 144 dpi: 142
    size: 344x193mm (13.54x7.6") diag: 394mm (15.53") modes: N/A
  API: OpenGL v: 4.6 Mesa 23.0.3 renderer: Mesa Intel UHD Graphics (TGL GT1)
    direct-render: Yes
Audio:
  Device-1: Intel Tiger Lake-H HD Audio vendor: Micro-Star MSI
    driver: sof-audio-pci-intel-tgl
    alternate: snd_hda_intel,snd_sof_pci_intel_tgl bus-ID: 00:1f.3
    chip-ID: 8086:43c8 class-ID: 0401
  Device-2: NVIDIA GA106 High Definition Audio vendor: Micro-Star MSI
    driver: snd_hda_intel v: kernel pcie: gen: 1 speed: 2.5 GT/s lanes: 16
    link-max: gen: 4 speed: 16 GT/s bus-ID: 01:00.1 chip-ID: 10de:228e
    class-ID: 0403
  API: ALSA v: k6.3.1-zen1-1-zen status: kernel-api with: aoss
    type: oss-emulator tools: N/A
  Server-1: PipeWire v: 0.3.70 status: active with: 1: pipewire-pulse
    status: active 2: wireplumber status: active 3: pipewire-alsa type: plugin
    4: pw-jack type: plugin tools: pactl,pw-cat,pw-cli,wpctl
Network:
  Device-1: Intel Tiger Lake PCH CNVi WiFi driver: iwlwifi v: kernel
    bus-ID: 00:14.3 chip-ID: 8086:43f0 class-ID: 0280
  IF: wlo1 state: up mac: <filter>
  Device-2: Realtek RTL8111/8168/8411 PCI Express Gigabit Ethernet
    vendor: Micro-Star MSI driver: r8169 v: kernel pcie: gen: 1 speed: 2.5 GT/s
    lanes: 1 port: 3000 bus-ID: 03:00.0 chip-ID: 10ec:8168 class-ID: 0200
  IF: enp3s0 state: down mac: <filter>
Bluetooth:
  Device-1: Intel AX201 Bluetooth type: USB driver: btusb v: 0.8
    bus-ID: 3-14:5 chip-ID: 8087:0026 class-ID: e001
  Report: bt-adapter ID: hci0 rfk-id: 0 state: up address: <filter>
Drives:
  Local Storage: total: 476.94 GiB used: 27.11 GiB (5.7%)
  SMART Message: Unable to run smartctl. Root privileges required.
  ID-1: /dev/nvme0n1 maj-min: 259:0 vendor: Kingston model: OM8PCP3512F-AI1
    size: 476.94 GiB block-size: physical: 512 B logical: 512 B speed: 31.6 Gb/s
    lanes: 4 type: SSD serial: <filter> rev: ECFK52.8 temp: 30.9 C scheme: GPT
Partition:
  ID-1: / raw-size: 459.78 GiB size: 459.78 GiB (100.00%)
    used: 27.11 GiB (5.9%) fs: btrfs dev: /dev/nvme0n1p2 maj-min: 259:2
  ID-2: /boot/efi raw-size: 300 MiB size: 299.4 MiB (99.80%)
    used: 576 KiB (0.2%) fs: vfat dev: /dev/nvme0n1p1 maj-min: 259:1
  ID-3: /home raw-size: 459.78 GiB size: 459.78 GiB (100.00%)
    used: 27.11 GiB (5.9%) fs: btrfs dev: /dev/nvme0n1p2 maj-min: 259:2
  ID-4: /var/log raw-size: 459.78 GiB size: 459.78 GiB (100.00%)
    used: 27.11 GiB (5.9%) fs: btrfs dev: /dev/nvme0n1p2 maj-min: 259:2
  ID-5: /var/tmp raw-size: 459.78 GiB size: 459.78 GiB (100.00%)
    used: 27.11 GiB (5.9%) fs: btrfs dev: /dev/nvme0n1p2 maj-min: 259:2
Swap:
  Kernel: swappiness: 133 (default 60) cache-pressure: 100 (default)
  ID-1: swap-1 type: zram size: 15.33 GiB used: 0 KiB (0.0%) priority: 100
    dev: /dev/zram0
  ID-2: swap-2 type: partition size: 16.86 GiB used: 0 KiB (0.0%)
    priority: -2 dev: /dev/nvme0n1p3 maj-min: 259:3
Sensors:
  System Temperatures: cpu: 52.0 C mobo: N/A
  Fan Speeds (RPM): N/A
Info:
  Processes: 318 Uptime: 7m wakeups: 1 Memory: 15.33 GiB
  used: 3.77 GiB (24.6%) Init: systemd v: 253 default: graphical
  tool: systemctl Compilers: gcc: 13.1.1 Packages: pm: pacman pkgs: 2007
  libs: 561 tools: octopi,paru Shell: fish v: 3.6.1 default: Bash v: 5.1.16
  running-in: konsole inxi: 3.3.26
Garuda (2.6.16-1):
  System install date:     2023-04-30
  Last full system update: 2023-05-07
  Is partially upgraded:   No
  Relevant software:       snapper NetworkManager dracut nvidia-dkms
  Windows dual boot:       No/Undetected
  Failed units:

Thanks for help in advance!

2

Please try instead from a terminal:

garuda-update -a

It could be due to this bug, closed yesterday with comment "old qgpgme package removed from [core] ":

5 Likes
3

And there you go. You just saved my day. Again!
You're awesome! :blush:
Thank you very much for your kind help!

2 Likes
4

Do yourself a favor and remove Discover.

4 Likes
5

Or: :slight_smile:

Search for apps with what you want (
pacseek, octopi, pamac, discover)
but use only pacman in terminal for update or installation.

garuda-update
or
update
or
upd

alias | grep upd
alias upd 'update -a'
6 Likes
6

Myself I use Pacseek to look for individual packages and for updates garuda-update followed by topgrade to do everything else garuda-update doesn't.

7

You shouldn’t perform system updates with Discover, but it is THE ONLY package manager that will update your KDE system themes from System Settings, so it does serve a purpose.

3 Likes
8

Good to know, thanks, as I don't use store themes I wasn't aware of that.

2 Likes
9

OK the I’ll revise. Run garuda-update, update everything else garuda-update didn’t, then run Discover.

3 Likes
10

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