Bunch of python related stuff went haywire

Hey guys I’m gonna need some assistance with this one

( 8/17) Checking for package with missing dependencies...
File "/usr/lib/libkhotkeysprivate.so.5.27.9" from package "khotkeys" is missing dependency "libkworkspace5.so.5"
File "/usr/lib/qt/plugins/kcm_hotkeys.so" from package "khotkeys" is missing dependency "libkworkspace5.so.5"
File "/usr/lib/qt/plugins/kf5/kded/khotkeys.so" from package "khotkeys" is missing dependency "libkworkspace5.so.5"
File "/usr/lib/python3.11/site-packages/PySide2/QtDataVisualization.cpython-311-x86_64-linux-gnu.so" from package "pyside2" is missing dependency "libQt5DataVisualization.so.5"
File "/usr/lib/libqgpgme.so.15.5.1" from package "qgpgme-qt5" is missing dependency "libgpgmepp.so.6"
File "/usr/lib/libqgpgme.so.15.5.1" from package "qgpgme-qt5" is missing dependency "libgpgme.so.11"
File "/usr/lib/libqgpgme.so.15.5.1" from package "qgpgme-qt5" is missing dependency "libassuan.so.0"
Package "guiscrcpy" has files in directory "/usr/lib/python3.11" that are ignored by the current Python interpreter
Package "pyside2" has files in directory "/usr/lib/python3.11" that are ignored by the current Python interpreter
Package "python-shiboken2" has files in directory "/usr/lib/python3.11" that are ignored by the current Python interpreter

These packages went missing 1 or 2 days ago and I don’t know enough about them to fix it. I’ve tried reinstalling them but then on the next reboot my desktop environment was broken and I had to restore a snapshot.

I’ve been down this rabbithole of missing qt dependencies on a different distro before and I know I can’t handle it :smiley:

Garuda-inxi

System:
Kernel: 6.15.8-zen1-2-zen arch: x86_64 bits: 64 compiler: gcc v: 15.1.1
clocksource: tsc avail: hpet,acpi_pm
parameters: BOOT_IMAGE=/@/boot/vmlinuz-linux-zen
root=UUID=009286cb-0285-4127-a549-89672838992b rw rootflags=subvol=@
quiet resume=UUID=58b306a5-086f-46bd-affd-6a1e60fb5244 loglevel=3 ibt=off
Desktop: KDE Plasma v: 6.4.3 tk: Qt v: N/A info: frameworks v: 6.16.0
wm: kwin_wayland vt: 1 dm: SDDM Distro: Garuda base: Arch Linux
Machine:
Type: Desktop System: ASUS product: N/A v: N/A serial:
Mobo: ASUSTeK model: ROG STRIX B650E-E GAMING WIFI v: Rev 1.xx
serial: part-nu: SKU uuid:
UEFI: American Megatrends v: 1654 date: 08/25/2023
CPU:
Info: model: AMD Ryzen 7 7700X bits: 64 type: MT MCP arch: Zen 4 gen: 4
level: v4 note: check built: 2022+ process: TSMC n5 (5nm) family: 0x19 (25)
model-id: 0x61 (97) stepping: 2 microcode: 0xA60120A
Topology: cpus: 1x dies: 1 clusters: 1 cores: 8 threads: 16 tpc: 2
smt: enabled cache: L1: 512 KiB desc: d-8x32 KiB; i-8x32 KiB L2: 8 MiB
desc: 8x1024 KiB L3: 32 MiB desc: 1x32 MiB
Speed (MHz): avg: 5349 min/max: 403/5576 boost: enabled scaling:
driver: amd-pstate-epp governor: performance cores: 1: 5349 2: 5349 3: 5349
4: 5349 5: 5349 6: 5349 7: 5349 8: 5349 9: 5349 10: 5349 11: 5349 12: 5349
13: 5349 14: 5349 15: 5349 16: 5349 bogomips: 144000
Flags: avx avx2 ht lm nx pae sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3 svm
Vulnerabilities:
Graphics:
Device-1: Advanced Micro Devices [AMD/ATI] Navi 21 [Radeon RX 6800/6800 XT
/ 6900 XT] vendor: Micro-Star MSI driver: amdgpu v: kernel arch: RDNA-2
code: Navi-2x process: TSMC n7 (7nm) built: 2020-22 pcie: gen: 4
speed: 16 GT/s lanes: 16 ports: active: DP-3,HDMI-A-1
empty: DP-1,DP-2,Writeback-1 bus-ID: 03:00.0 chip-ID: 1002:73bf
class-ID: 0300
Display: wayland server: X.org v: 1.21.1.18 with: Xwayland v: 24.1.8
compositor: kwin_wayland driver: X: loaded: amdgpu
unloaded: modesetting,radeon alternate: fbdev,vesa dri: radeonsi
gpu: amdgpu d-rect: 4480x1440 display-ID: 0
Monitor-1: DP-3 pos: primary,left model: Acer VG270U P serial:
built: 2021 res: mode: 2560x1440 hz: 120 scale: 100% (1) dpi: 109 gamma: 1.2
size: 597x336mm (23.5x13.23") diag: 685mm (27") ratio: 16:9 modes:
max: 2560x1440 min: 720x400
Monitor-2: HDMI-A-1 pos: right model: ViewSonic VA2407 Series
serial: built: 2019 res: mode: 1920x1080 hz: 60 scale: 100% (1)
dpi: 94 gamma: 1.2 size: 521x293mm (20.51x11.54") diag: 598mm (23.5")
ratio: 16:9 modes: max: 1920x1080 min: 720x400
API: EGL v: 1.5 hw: drv: amd radeonsi platforms: device: 0 drv: radeonsi
device: 1 drv: swrast gbm: drv: kms_swrast surfaceless: drv: radeonsi
wayland: drv: radeonsi x11: drv: radeonsi
API: OpenGL v: 4.6 compat-v: 4.5 vendor: amd mesa v: 25.1.7-arch1.1
glx-v: 1.4 direct-render: yes renderer: AMD Radeon RX 6800 (radeonsi navi21
LLVM 20.1.8 DRM 3.63 6.15.8-zen1-2-zen) device-ID: 1002:73bf
memory: 15.62 GiB unified: no display-ID: :1.0
API: Vulkan v: 1.4.321 layers: 13 device: 0 type: discrete-gpu name: AMD
Radeon RX 6800 (RADV NAVI21) driver: mesa radv v: 25.1.7-arch1.1
device-ID: 1002:73bf surfaces: N/A device: 1 type: cpu name: llvmpipe
(LLVM 20.1.8 256 bits) driver: mesa llvmpipe v: 25.1.7-arch1.1 (LLVM
20.1.8) device-ID: 10005:0000 surfaces: N/A
Info: Tools: api: clinfo, eglinfo, glxinfo, vulkaninfo
de: kscreen-console,kscreen-doctor gpu: corectrl wl: wayland-info
x11: xdpyinfo, xprop, xrandr
Audio:
Device-1: Advanced Micro Devices [AMD/ATI] Navi 21/23 HDMI/DP Audio
driver: snd_hda_intel v: kernel pcie: gen: 4 speed: 16 GT/s lanes: 16
bus-ID: 03:00.1 chip-ID: 1002:ab28 class-ID: 0403
Device-2: ASUSTek USB Audio driver: hid-generic,snd-usb-audio,usbhid
type: USB rev: 2.0 speed: 480 Mb/s lanes: 1 mode: 2.0 bus-ID: 1-6:2
chip-ID: 0b05:1a52 class-ID: 0300
API: ALSA v: k6.15.8-zen1-2-zen status: kernel-api with: aoss
type: oss-emulator tools: N/A
Server-1: PipeWire v: 1.4.7 status: active with: 1: pipewire-pulse
status: active 2: wireplumber status: active 3: pipewire-alsa type: plugin
4: pw-jack type: plugin tools: pactl,pw-cat,pw-cli,wpctl
Network:
Device-1: Intel Ethernet I225-V vendor: ASUSTeK driver: igc v: kernel pcie:
gen: 2 speed: 5 GT/s lanes: 1 port: N/A bus-ID: 08:00.0 chip-ID: 8086:15f3
class-ID: 0200
IF: eno1 state: down mac:
Device-2: MEDIATEK MT7922 802.11ax PCI Express Wireless Network Adapter
vendor: Foxconn driver: mt7921e v: kernel pcie: gen: 2 speed: 5 GT/s
lanes: 1 bus-ID: 09:00.0 chip-ID: 14c3:0616 class-ID: 0280
IF: wlp9s0 state: up mac:
Info: services: NetworkManager, smbd, systemd-timesyncd, wpa_supplicant
Bluetooth:
Device-1: Foxconn / Hon Hai Wireless_Device driver: btusb v: 0.8 type: USB
rev: 2.1 speed: 480 Mb/s lanes: 1 mode: 2.0 bus-ID: 1-11:6
chip-ID: 0489:e0e2 class-ID: e001 serial:
Report: btmgmt ID: hci0 rfk-id: 0 state: up address: N/A
Drives:
Local Storage: total: 6.84 TiB used: 1.95 TiB (28.5%)
SMART Message: Unable to run smartctl. Root privileges required.
ID-1: /dev/nvme0n1 maj-min: 259:5 vendor: Samsung model: SSD 980 PRO 1TB
size: 931.51 GiB block-size: physical: 512 B logical: 512 B speed: 63.2 Gb/s
lanes: 4 tech: SSD serial: fw-rev: 5B2QGXA7 temp: 32.9 C
scheme: GPT
ID-2: /dev/nvme1n1 maj-min: 259:0 vendor: Addlink
model: M.2 PCIE G3x4 NVMe RGB size: 953.87 GiB block-size: physical: 512 B
logical: 512 B speed: 31.6 Gb/s lanes: 4 tech: SSD serial:
fw-rev: ECFM12.3 temp: 30.9 C scheme: GPT
ID-3: /dev/sda maj-min: 8:0 vendor: Samsung model: SSD 850 EVO 500GB
size: 465.76 GiB block-size: physical: 512 B logical: 512 B speed: 6.0 Gb/s
tech: SSD serial: fw-rev: 2B6Q scheme: MBR
ID-4: /dev/sdb maj-min: 8:16 vendor: Seagate model: ST3000DM001-1CH166
size: 2.73 TiB block-size: physical: 4096 B logical: 512 B speed: 6.0 Gb/s
tech: HDD rpm: 7200 serial: fw-rev: CC27 scheme: GPT
ID-5: /dev/sdc maj-min: 8:32 vendor: Samsung model: SSD 870 EVO 2TB
size: 1.82 TiB block-size: physical: 512 B logical: 512 B speed: 6.0 Gb/s
tech: SSD serial: fw-rev: 3B6Q scheme: GPT
Partition:
ID-1: / raw-size: 897.02 GiB size: 897.02 GiB (100.00%)
used: 810.33 GiB (90.3%) fs: btrfs dev: /dev/nvme0n1p2 maj-min: 259:7
ID-2: /boot/efi raw-size: 300 MiB size: 299.4 MiB (99.80%)
used: 616 KiB (0.2%) fs: vfat dev: /dev/nvme0n1p1 maj-min: 259:6
ID-3: /home raw-size: 897.02 GiB size: 897.02 GiB (100.00%)
used: 810.33 GiB (90.3%) fs: btrfs dev: /dev/nvme0n1p2 maj-min: 259:7
ID-4: /var/log raw-size: 897.02 GiB size: 897.02 GiB (100.00%)
used: 810.33 GiB (90.3%) fs: btrfs dev: /dev/nvme0n1p2 maj-min: 259:7
ID-5: /var/tmp raw-size: 897.02 GiB size: 897.02 GiB (100.00%)
used: 810.33 GiB (90.3%) fs: btrfs dev: /dev/nvme0n1p2 maj-min: 259:7
Swap:
Kernel: swappiness: 133 (default 60) cache-pressure: 100 (default) zswap: no
ID-1: swap-1 type: zram size: 31.07 GiB used: 33.9 MiB (0.1%)
priority: 100 comp: zstd avail: lzo-rle,lzo,lz4,lz4hc,deflate,842
dev: /dev/zram0
ID-2: swap-2 type: partition size: 34.19 GiB used: 0 KiB (0.0%)
priority: -2 dev: /dev/nvme0n1p3 maj-min: 259:8
Sensors:
System Temperatures: cpu: 48.5 C mobo: 34.0 C gpu: amdgpu temp: 40.0 C
mem: 44.0 C
Fan Speeds (rpm): N/A gpu: amdgpu fan: 0
Info:
Memory: total: 32 GiB note: est. available: 31.07 GiB used: 4.13 GiB (13.3%)
Processes: 446 Power: uptime: 6m states: freeze,mem,disk suspend: deep
avail: s2idle wakeups: 0 hibernate: platform avail: shutdown, reboot,
suspend, test_resume image: 12.41 GiB services: org_kde_powerdevil,
power-profiles-daemon, upowerd Init: systemd v: 257 default: graphical
tool: systemctl
Packages: pm: pacman pkgs: 2208 libs: 597 tools: octopi,pamac,paru
Compilers: clang: 20.1.8 gcc: 15.1.1 Shell: garuda-inxi default: fish
v: 4.0.2 running-in: konsole inxi: 3.3.38
Garuda (2.7.3-2):
System install date: 2024-03-21
Last full system update: 2025-08-02
Is partially upgraded: No
Relevant software: snapper NetworkManager dracut
Windows dual boot: Probably (Run as root to verify)
Failed units:

As far as I can see, khotkeysis no more in the AUR and no more maintained at all and should be definitely removed.

For the rest, remember to update also AUR packages with:

garuda-update -a
2 Likes

Package qgpgme-qt5 needs to be updated from the AUR.
Package khotkeys should be uninstalled.
Package pyside2 needs to be updated from the AUR.
Package guiscrcpy is unmaintained since 2023, should be uninstalled.
Package python-shiboken2 should be updated from the AUR.

In short:

sudo pacman -R khotkeys guiscrcpy
garuda-update -a
4 Likes

Oh.. I was not aware AUR was not included in

update

script. Ooops. Thank you for the rundown. This is taking a while

Everything is working now. Thank you! Lesson learned.

you can add UPDATE_AUR=1 to your garuda update config. As shown here Garuda Update | Garuda Linux wiki I do recommend it personally. This will also apply when you run update/upd.

1 Like

Yup thank you I figured this was the go-to method. I’m going to do it eventually but first I’m on manual AUR updates for a while to get a feeling for all the dependencies I have there. A lot of them came through the install wizard back when I knew way less about Linux.

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