Tons of orphaned packages just after installation

Hello,
Lately I had GRUB/ssd issue and I can't boot to my system so I decide to fresh install again. I got some backup of my personal file Docs etc....
So I have completely fresh Garuda KDE.

I did finish installation with Garuda assistant, system updates and install some extra stuff slack, docker, conky... but when I install some new package I notoced I have tons of orphaned packages, which I clearly need.... xorg-server, sudo, current kernel, current garuda sweet theme, partitionmanager....etc

Packages (317) accounts-qml-module-0.7-4  alpm_octopi_utils-1.0.2-3.1  android-udev-20220611-1  bat-0.21.0-2
beautyline-1:20220814-1  bluez-hid2hci-5.65-2  bluez-plugins-5.65-2  bluez-tools-0.2.0-5
bluez-utils-5.65-2  brightnessctl-0.5.1-2  btrfsmaintenance-0.5-2
candy-icons-git-r927.68d7b37-1  chaotic-mirrorlist-20220828-2  ckbcomp-1.208-1
dbus-python-1.2.18-3  dhclient-4.4.3-3  ding-libs-0.6.2-1  discount-2.2.7.b-1
djvulibre-3.5.28-3  exa-0.10.1-5  expac-10-5  fakeroot-1.29-1  fftw-3.3.10-3
find-the-command-git-2.0.r2.gfecba1a-1  firedragon-104.0-1  fish-3.5.1-1
fish-autopair-1.0.4-1  fprintd-1.94.2-1  fzf-0.32.1-1  game-devices-udev-0.17-1
garuda-bash-config-1.0.1-1  garuda-common-settings-2.6.6-1  garuda-fish-config-1.5.4-1
garuda-hooks-2.8.2-1  garuda-hotfixes-1.1.2-1  garuda-icons-r36.98d3d5a-1
garuda-migrations-1.5.0-1  garuda-settings-manager-1.0.1-2  garuda-starship-prompt-1.0.3-1
garuda-wallpapers-r75.f168bbe-1  gcr-3.41.1-2  geoclue-2.6.0-2  geocode-glib-3.26.4-1
glew-2.2.0-5  glibmm-2.66.4-1  glslang-11.11.0-1  groff-1.22.4-7  grub-btrfs-4.11-2
gssproxy-0.9.1-2  gst-plugin-pipewire-1:0.3.56-1  gtk4-1:4.6.7-1  http-parser-2.9.4-1
hwinfo-22.1-1  hwloc-2.8.0-1  iio-sensor-proxy-3.3-1  intel-media-driver-22.4.4-2
jsoncpp-1.9.5-2  kaccounts-integration-22.08.0-2  kcolorpicker-0.2.0-1
kdelibs4support-5.97.0-1  kemoticons-5.97.0-1  kernel-modules-hook-0.1.7-2
kfiredragonhelper-5.0.6-1  kimageannotator-0.6.0-1  kjs-5.97.0-1  kmenuedit-5.25.4-1
kpmcore-22.08.0-1  ksysguard-5.22.0-1  kvantum-1.0.4-1  lib32-freeglut-3.2.2-2
lib32-glew-2.2.0-3  lib32-libva-2.15.0-2  lib32-libva-intel-driver-2.4.1-1
lib32-libva-mesa-driver-22.1.7-1  lib32-libva-vdpau-driver-0.7.4-6  lib32-libvdpau-1.5-1
lib32-libxmu-1.1.3-2  lib32-libxt-1.2.1-1  lib32-mesa-demos-8.5.0-1  lib32-mesa-vdpau-22.1.7-1
lib32-ocl-icd-2.3.1-1  lib32-vulkan-intel-22.1.7-1  lib32-vulkan-mesa-layers-22.1.7-1
lib32-vulkan-radeon-22.1.7-1  libaccounts-glib-1.25-7  libaccounts-qt-1.16-3
libadwaita-1:1.1.4-1  libcdio-paranoia-10.2+2.0.1-2  libfontenc-1.1.4-3  libfprint-1.94.4-1
libgit2-1:1.4.4-1  libibus-1.5.26-2  libnma-1.8.40-1  libnma-common-1.8.40-1
libpipeline-1.5.6-1  libplacebo-4.208.0-1  libsamplerate-0.2.2-1  libsigc++-2.10.8-1
libspectre-0.2.10-1  libusb-compat-0.1.7-1  libva-intel-driver-2.4.1-2
libva-mesa-driver-22.1.7-1  libva-utils-2.15.0-1  libva-vdpau-driver-0.7.4-6
libvdpau-va-gl-0.4.2-3  libx86emu-3.5-2  libxfont2-2.0.5-1  libxvmc-1.0.13-1
licenses-20220125-1  linuxconsole-1.8.1-1  lirc-1:0.10.1-12  mailcap-2.1.53-1  mcfly-0.6.1-1
mesa-demos-8.5.0-2  mesa-vdpau-22.1.7-1  mhwd-amdgpu-19.1.0-1  mhwd-ati-19.1.0-1
mhwd-db-garuda-git-1:r62.889aefa-7  mhwd-garuda-git-r20.dc8eff1-2  mhwd-nvidia-515.43.04-2
mhwd-nvidia-390xx-390.143-1  mhwd-nvidia-470xx-470.94-1  mujs-1.2.0-2
nerd-fonts-fantasque-sans-mono-2.2.1-1  nerd-fonts-fira-code-2.1.0-2
network-manager-sstp-1.3.0-1  networkmanager-fortisslvpn-1.4.0-2  networkmanager-l2tp-1.20.4-5
networkmanager-openconnect-1.2.8-2  networkmanager-openvpn-1.8.18-2
networkmanager-pptp-1.2.10-2  networkmanager-strongswan-1.6.0-1  networkmanager-vpnc-1.2.8-2
nfsidmap-2.6.2-1  nm-cloud-setup-1.38.4-1  noto-color-emoji-fontconfig-1.0.0-1
oath-toolkit-2.6.7-1  ocl-icd-2.3.1-1  oniguruma-6.9.8-1  openconnect-1:9.01-2
openfortivpn-1.17.3-1  openldap-2.6.3-1  openmpi-4.1.4-1  openpmix-4.2.0-1
openresolv-3.12.0-1  openvpn-2.5.7-1  pacman-contrib-1.6.0-1  pahole-1:1.23-1
pcsclite-1.9.8-1  perl-file-listing-6.15-2  perl-html-parser-3.78-2  perl-html-tagset-3.20-12
perl-http-cookies-6.10-3  perl-http-daemon-6.14-2  perl-http-date-6.05-5
perl-http-message-6.37-1  perl-http-negotiate-6.01-10  perl-io-html-1.004-3
perl-libwww-6.67-1  perl-lwp-mediatypes-6.04-2  perl-net-http-6.22-2  perl-try-tiny-0.31-2
perl-www-robotrules-6.02-10  perl-xml-parser-2.46-4  perl-xml-writer-0.900-1
pipewire-alsa-1:0.3.56-1  pipewire-pulse-1:0.3.56-1  pipewire-v4l2-1:0.3.56-1
pipewire-zeroconf-1:0.3.56-1  pkcs11-helper-1.29.0-1  pkgfile-21-2
plasma-browser-integration-5.25.4-1  plasma5-applets-eventcalendar-76-1
plasma5-applets-window-appmenu-0.8.0-1  plasma5-applets-window-buttons-0.11.1-1
polkit-kde-agent-5.25.4-1  pptpclient-1.10.0-2  profile-sync-daemon-6.45-1  psmisc-23.5-1
purpose-5.97.0-1  python-packaging-21.3-1  python-prctl-1.8.1-3  python-pyparsing-3.0.9-1
qtermwidget-1.1.0-1  realtime-privileges-4-1  rhash-1.4.2-1  rp-pppoe-3.15-2  rpcbind-1.2.6-2
rtkit-0.13-2  rubberband-3.0.0-2  sddm-0.19.0-8  shaderc-2022.1-4
signon-kwallet-extension-22.08.0-1  signon-plugin-oauth2-0.25-1  signon-ui-0.17+20171022-3
signond-8.61-1  smartmontools-7.3-1  snap-pac-3.0.1-1  snapper-0.10.2-2  snapper-tools-1.1.1-2
socat-1.7.4.3-1  sof-firmware-2.2.1-1  sstp-client-1:1.0.17-1  starship-1.9.1-1  stoken-0.92-4
strongswan-5.9.7-1  sudo-1.9.11.p3-1  sweet-kde-theme-git-r24.9e36d3a-4
sweet-theme-full-git-r281.0061be8-1  systemd-oomd-defaults-249.7-1  systemd-sysvcompat-251.4-1
tealdeer-1.5.0-1  ttf-iosevka-nerd-2.1.0-2  uchardet-0.0.7-1  unixodbc-2.3.11-1
usb_modeswitch-2.6.1-3  vdpauinfo-1.5-1  vpnc-1:0.5.3.r506.r204-1  vulkan-intel-22.1.7-1
vulkan-mesa-layers-22.1.7-1  vulkan-radeon-22.1.7-1  vulkan-swrast-22.1.7-1
wireguard-tools-1.0.20210914-1  xdg-desktop-portal-kde-5.25.4-1  xdg-user-dirs-0.18-1
xdotool-3.20211022.1-1  xf86-input-elographics-1.4.2-3  xf86-input-evdev-2.10.6-3
xf86-input-libinput-1.2.1-1  xf86-input-void-1.4.1-6  xf86-input-wacom-1.1.0-1
xf86-video-amdgpu-22.0.0-1  xf86-video-ati-1:19.1.0.r9.g5eba006e-2
xf86-video-nouveau-1.0.17-2  xl2tpd-1.3.17-1  xmlsec-1.2.34-1  xorg-fonts-encodings-1.0.6-1
xorg-server-21.1.4-1  xorg-server-common-21.1.4-1  xorg-setxkbmap-1.3.3-1
xorg-xkbcomp-1.4.5-1  zram-generator-1.1.2-1  ark-22.08.0-1  autorandr-1.12.1-2  base-3-1
bison-3.8.2-4  bluetooth-autoconnect-1.3-1.1  bluetooth-support-1-7  boost-1.79.0-1
celt-0.11.3-5  cmake-3.24.1-1  dolphin-plugins-22.08.0-1  downgrade-11.2.1-1  elfutils-0.187-2
firedragon-extension-plasma-integration-1.8.1-3  fscrypt-0.3.3-2  garuda-dr460nized-2.0.5-1
garuda-settings-manager-kcm-1.0.1-2  garuda-setup-assistant-3.0.1-1
garuda-system-maintenance-1.6.1-1  garuda-video-linux-config-1:r62.889aefa-7
garuda-welcome-1.1.6-1  gnome-firmware-42.2-1  input-devices-support-1.0.2-2
intel-ucode-20220809-1  inxi-3.3.20.1-1  jamesdsp-2.3-5  js78-78.15.0-4
kde-gtk-config-5.25.4-1  khotkeys-5.25.4-1  kinit-5.97.0-1  kwallet-pam-5.25.4-1
kwayland-integration-5.25.4-1  kwin-scripts-forceblur-0.6.1-1  libcroco-0.6.13-2
libhandy-1.6.3-1  libkipi-21.12.0-1  libmms-0.6.4-3  libofa-0.9.3-9  linux-zen-5.19.4.zen1-1
linux-zen-headers-5.19.4.zen1-1  logrotate-3.20.1-1  lsb-release-2.0.r48.3cf5103-1
lua52-5.2.4-5  lzip-1.23-2  man-db-2.10.2-1  mercurial-6.2.1-1  micro-2.0.11-4  mpv-1:0.34.1-5
neard-0.18-1  networkmanager-support-1-5  nfs-utils-2.6.2-1  ninja-1.11.0-1
nm-connection-editor-1.28.0-1  ntp-4.2.8.p15-1  octopi-0.13.0-1  okular-22.08.0-1
partitionmanager-22.08.0-1  perl-clone-0.45-4  pipewire-support-1-10  plasma-desktop-5.25.4-1
plasma-firewall-5.25.4-1  plasma-pa-5.25.4-1  plasma-systemmonitor-5.25.4-1
plymouth-theme-dr460nized-r5.630da28-1  rate-mirrors-0.11.0-2  resvg-0.23.0-1
sddm-kcm-5.25.4-1  snapper-support-1.1.1-1  spectacle-22.08.0-1  xdg-desktop-portal-1.15.0-1
xf86-video-intel-1:2.99.917+916+g31486f40-2  xorg-xhost-1.0.8-3  xorg-xwayland-22.1.3-1
xsel-1.2.0.20200527-1  zita-alsa-pcmi-0.5.1-1  zita-resampler-1.8.0-1

Total Removed Size:  1947,56 MiB

What is going on.... it want clear some stuff was installed during installation process.... how to fix this....

Edit:
What is more crazy Octopi shows orphaned packages as installed (required by others) but somehow they are consider as orphaned....

λ garuda-inxi
System:
Kernel: 5.19.4-zen1-1-zen arch: x86_64 bits: 64 compiler: gcc v: 12.2.0
parameters: BOOT_IMAGE=/@/boot/vmlinuz-linux-zen
root=UUID=54a344f0-e50d-4561-a72c-804388cc1d62 rw [email protected]
quiet
cryptdevice=UUID=838eb139-aebd-421d-9116-0aa6ab018909:luks-838eb139-aebd-421d-9116-0aa6ab018909
root=/dev/mapper/luks-838eb139-aebd-421d-9116-0aa6ab018909 splash
rd.udev.log_priority=3 vt.global_cursor_default=0
resume=/dev/mapper/luks-a3defc1e-079a-4292-8da9-c142c2fc9eef loglevel=3
Desktop: KDE Plasma v: 5.25.4 tk: Qt v: 5.15.5 info: latte-dock
wm: kwin_x11 vt: 1 dm: SDDM Distro: Garuda Linux base: Arch Linux
Machine:
Type: Laptop System: HP product: HP ProBook 640 G2 v: N/A
serial: <superuser required> Chassis: type: 10 serial: <superuser required>
Mobo: HP model: 80FD v: KBC Version 22.74 serial: <superuser required>
UEFI: HP v: N76 Ver. 01.57 date: 07/28/2022
Battery:
ID-1: BAT0 charge: 35.5 Wh (98.9%) condition: 35.9/48.0 Wh (74.8%)
volts: 12.8 min: 11.4 model: Hewlett-Packard Primary type: Li-ion
serial: <filter> status: not charging cycles: 143
Device-1: hidpp_battery_1 model: Logitech MX Ergo Multi-Device Trackball
serial: <filter> charge: 100% (should be ignored) rechargeable: yes
status: discharging
CPU:
Info: model: Intel Core i5-6200U bits: 64 type: MT MCP arch: Skylake
gen: core 6 built: 2015 process: Intel 14nm family: 6 model-id: 0x4E (78)
stepping: 3 microcode: 0xF0
Topology: cpus: 1x cores: 2 tpc: 2 threads: 4 smt: enabled cache:
L1: 128 KiB desc: d-2x32 KiB; i-2x32 KiB L2: 512 KiB desc: 2x256 KiB
L3: 3 MiB desc: 1x3 MiB
Speed (MHz): avg: 1200 high: 2400 min/max: 400/2800 scaling:
driver: intel_pstate governor: powersave cores: 1: 800 2: 800 3: 800
4: 2400 bogomips: 19200
Flags: avx avx2 ht lm nx pae sse sse2 sse3 sse4_1 sse4_2 ssse3 vmx
Vulnerabilities:
Type: itlb_multihit status: KVM: VMX disabled
Type: l1tf mitigation: PTE Inversion; VMX: conditional cache flushes, SMT
vulnerable
Type: mds mitigation: Clear CPU buffers; SMT vulnerable
Type: meltdown mitigation: PTI
Type: mmio_stale_data mitigation: Clear CPU buffers; SMT vulnerable
Type: retbleed mitigation: IBRS
Type: spec_store_bypass mitigation: Speculative Store Bypass disabled via
prctl
Type: spectre_v1 mitigation: usercopy/swapgs barriers and __user pointer
sanitization
Type: spectre_v2 mitigation: IBRS, IBPB: conditional, RSB filling,
PBRSB-eIBRS: Not affected
Type: srbds mitigation: Microcode
Type: tsx_async_abort status: Not affected
Graphics:
Device-1: Intel Skylake GT2 [HD Graphics 520] vendor: Hewlett-Packard
driver: i915 v: kernel arch: Gen-9 process: Intel 14n built: 2015-16 ports:
active: DP-3,DP-4,eDP-1 empty: DP-1, DP-2, DP-5, HDMI-A-1, HDMI-A-2
bus-ID: 00:02.0 chip-ID: 8086:1916 class-ID: 0300
Device-2: Z-Star Micro Venus USB2.0 Camera type: USB
driver: snd-usb-audio,uvcvideo bus-ID: 1-4.4:13 chip-ID: 0ac8:3420
class-ID: 0102 serial: <filter>
Device-3: Cheng Uei Precision Industry (Foxlink) HP HD Camera type: USB
driver: uvcvideo bus-ID: 1-9:12 chip-ID: 05c8:0383 class-ID: 0e02
Display: x11 server: X.Org v: 21.1.4 with: Xwayland v: 22.1.3
compositor: kwin_x11 driver: X: loaded: intel unloaded: modesetting
alternate: fbdev,vesa gpu: i915 display-ID: :0 screens: 1
Screen-1: 0 s-res: 6400x1440 s-dpi: 96 s-size: 1688x380mm (66.46x14.96")
s-diag: 1730mm (68.12")
Monitor-1: not-matched mapped: DP1-1 pos: primary,top-center
res: 2560x1440 hz: 60 dpi: 108 size: 600x340mm (23.62x13.39")
diag: 690mm (27.15") modes: N/A
Monitor-2: not-matched mapped: DP1-2 pos: bottom-r res: 1920x1080 hz: 60
dpi: 92 size: 530x300mm (20.87x11.81") diag: 609mm (23.98") modes: N/A
Monitor-3: eDP-1 mapped: eDP1 pos: primary,top-left model: ChiMei InnoLux
0x14c0 built: 2015 res: 1920x1080 hz: 60 dpi: 157 gamma: 1.2
size: 310x170mm (12.2x6.69") diag: 353mm (13.9") ratio: 16:9
modes: 1920x1080
OpenGL: renderer: Mesa Intel HD Graphics 520 (SKL GT2) v: 4.6 Mesa 22.1.7
direct render: Yes
Audio:
Device-1: Intel Sunrise Point-LP HD Audio vendor: Hewlett-Packard
driver: snd_hda_intel v: kernel bus-ID: 1-4.1:5 chip-ID: 0b0e:0306
alternate: snd_soc_skl,snd_soc_avs bus-ID: 00:1f.3 class-ID: 0300
chip-ID: 8086:9d70 serial: <filter> class-ID: 0403
Device-2: GN Netcom Jabra EVOLVE LINK type: USB
driver: jabra,snd-usb-audio,usbhid
Device-3: Z-Star Micro Venus USB2.0 Camera type: USB
driver: snd-usb-audio,uvcvideo bus-ID: 1-4.4:13 chip-ID: 0ac8:3420
class-ID: 0102 serial: <filter>
Sound Server-1: ALSA v: k5.19.4-zen1-1-zen running: yes
Sound Server-2: PulseAudio v: 16.1 running: no
Sound Server-3: PipeWire v: 0.3.56 running: yes
Network:
Device-1: Intel Ethernet I219-V vendor: Hewlett-Packard driver: e1000e
v: kernel port: N/A bus-ID: 00:1f.6 chip-ID: 8086:1570 class-ID: 0200
IF: enp0s31f6 state: up speed: 100 Mbps duplex: full mac: <filter>
Device-2: Intel Wireless 8260 driver: iwlwifi v: kernel pcie: gen: 1
speed: 2.5 GT/s lanes: 1 bus-ID: 02:00.0 chip-ID: 8086:24f3 class-ID: 0280
IF: wlp2s0 state: up mac: <filter>
Device-3: Lenovo USB-C Hub type: USB driver: r8152 bus-ID: 2-5.1:4
chip-ID: 17ef:7214 class-ID: 0000 serial: <filter>
IF: enp0s20f0u5u1 state: down mac: <filter>
Bluetooth:
Device-1: Intel Bluetooth wireless interface type: USB driver: btusb v: 0.8
bus-ID: 1-7:6 chip-ID: 8087:0a2b class-ID: e001
Report: bt-adapter ID: hci0 rfk-id: 0 state: down
bt-service: enabled,running rfk-block: hardware: no software: yes
address: <filter>
Drives:
Local Storage: total: 1.6 TiB used: 369.73 GiB (22.6%)
SMART Message: Unable to run smartctl. Root privileges required.
ID-1: /dev/sda maj-min: 8:0 vendor: SanDisk model: SD8SN8U-256G-1006
size: 238.47 GiB block-size: physical: 4096 B logical: 512 B
speed: 6.0 Gb/s type: SSD serial: <filter> rev: 0006 scheme: GPT
ID-2: /dev/sdc maj-min: 8:32 type: USB vendor: Samsung model: HD154UI
size: 1.36 TiB block-size: physical: 512 B logical: 512 B type: N/A
serial: <filter> scheme: MBR
Partition:
ID-1: / raw-size: 221.62 GiB size: 221.62 GiB (100.00%) used: 90.1 GiB
(40.7%) fs: btrfs dev: /dev/dm-0 maj-min: 254:0
mapped: luks-838eb139-aebd-421d-9116-0aa6ab018909
ID-2: /boot/efi raw-size: 300 MiB size: 299.4 MiB (99.80%) used: 736 KiB
(0.2%) fs: vfat dev: /dev/sda1 maj-min: 8:1
ID-3: /home raw-size: 221.62 GiB size: 221.62 GiB (100.00%) used: 90.1
GiB (40.7%) fs: btrfs dev: /dev/dm-0 maj-min: 254:0
mapped: luks-838eb139-aebd-421d-9116-0aa6ab018909
ID-4: /var/log raw-size: 221.62 GiB size: 221.62 GiB (100.00%) used: 90.1
GiB (40.7%) fs: btrfs dev: /dev/dm-0 maj-min: 254:0
mapped: luks-838eb139-aebd-421d-9116-0aa6ab018909
ID-5: /var/tmp raw-size: 221.62 GiB size: 221.62 GiB (100.00%) used: 90.1
GiB (40.7%) fs: btrfs dev: /dev/dm-0 maj-min: 254:0
mapped: luks-838eb139-aebd-421d-9116-0aa6ab018909
Swap:
Kernel: swappiness: 133 (default 60) cache-pressure: 100 (default)
ID-1: swap-1 type: zram size: 15.04 GiB used: 678.8 MiB (4.4%)
priority: 100 dev: /dev/zram0
ID-2: swap-2 type: partition size: 16.55 GiB used: 0 KiB (0.0%)
priority: -2 dev: /dev/dm-1 maj-min: 254:1
mapped: luks-a3defc1e-079a-4292-8da9-c142c2fc9eef
Sensors:
System Temperatures: cpu: 54.0 C pch: 47.5 C mobo: N/A
Fan Speeds (RPM): N/A
Info:
Processes: 268 Uptime: 7h 2m wakeups: 55 Memory: 15.04 GiB used: 8.01 GiB
(53.2%) Init: systemd v: 251 default: graphical tool: systemctl
Compilers: gcc: 12.2.0 clang: 14.0.6 Packages: pacman: 1276 lib: 339
Shell: fish v: 3.5.1 default: Bash v: 5.1.16 running-in: konsole
inxi: 3.3.20
Garuda (2.6.6-1):
System install date:     2022-08-28
Last full system update: 2022-08-28 ↻
Is partially upgraded:   No
Relevant software:       NetworkManager
Windows dual boot:       No/Undetected
Snapshots:               Snapper
Failed units:

I'm not sure why this happens; I have been following this thread, which describes the same issue, with great interest. Hopefully soon someone will crack the case. :man_detective:

4 Likes

I know the answer! Linux is just being Linux as usual​:sweat_smile:

1 Like

Did you backup the hidden config folders and files under your old Home directory and copy them over, too?

Exactly what command(s) are you using and where, please?

I just copy regular files from Documents, Downloads, Video or manual crated directories like PycharmProjects etc. No any dot files or directories.

I just click thru Garuda Assistant when it popup during first boot up after installation.

OK, cool. Detailed information allows others to be more helpful in their replies. My bet is a .skel file (or whatever configs dr460nf1r3 is using) is the culprit. It is an unusual situation. Not one typically seen in vanilla Arch--that I'm aware of.

This topic was automatically closed 14 days after the last reply. New replies are no longer allowed.